MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...ontrollers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene...a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons divided by Immedia...1311 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fun...ental concepts and experimental approaches in the analysis and interpretation of experim...n, structural variation, and ChIP-seq and RNA-seq analysis. Students will learn and appl...1284 days ago
1280 days ago
Genomic Open-source Breeding informatics initiative
To build open-source genomic data management and analysis tools to enable breeders to implement genomic and marker-assisted selection as part of their routine breeding programs. To transform b...1269 days ago
Breedbase is a comprehensive breeding management and analysis software
Breedbase is a comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping...1269 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true...1099 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short rea...at2 package). The package aims to cover the whole analysis workflow of typical high thro...ngle R script can contain all steps of a complete analysis, making it simple to document...1051 days ago
Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, A...In addition to providing random access to the base level, it includes several analysis functions. Meryl:...1046 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1041 days ago
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