IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares...to 73.3–97.1%. IQ-TREE is freely available at http://www.cibiv.at/software/iq...1957 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by t...and other graphical details. [Example] [Download software package (includes the manual)...u register) [Download manual] [Download software no...1922 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visua...1918 days ago
1903 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1800 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute sev...ve metagenomics method dedicated to NGS datasets. https://gatb.inria.fr/software/si...1819 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware accele...r that remarkably reduces the need for computationally-costly dynamic programming algorithms. The first key ide...1698 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioin...web applications for Bioinformatics. No previous programming knowledge is assumed. By foll...torial you will learn the fundamental concepts of programming by using scripting languages:...1695 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible s...features and optimizations, Seq makes writing high-performance genomics software as easy as writing...1679 days ago
1675 days ago