Hawkeye: an interactive visual analytics tool for genome assemblies
...ins an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, design...2005 days ago
2005 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
...that EXCAVATOR outperforms the other methods and is therefore a valuable tool for the investigation of CNVs...TOR is freely available at http://sourceforge.net/projects/excavatortool/.EXCAVATOR is a novel softwar...2003 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS]...1994 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section1994 days ago
1992 days ago
1987 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembl...map2 alignments to a closely related reference genome. The focus of this tool is on practicality and theref...1899 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline dr...tion pipeline (PhATE) across a user-specified set of phage genomes. This tool incorporates a de novo&n...1871 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1871 days ago