2079 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MA...2002 days ago
1984 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be gui...ol, through to building contigs and analysis of the results. At the end of the lab you will know: How to perf...1972 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle...d convenient pipeline for optical mapping analyses. https://github.com/TF-Chan-Lab/OMTools1904 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optiona...1466 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzi...fly. More at http://homes.sice.indiana.edu/yye/lab/teaching/spring2017-I529/ Mo...g_courses/mlbioinfo/mlbioinfo.htm http://www.raetschlab.org/lectures/MLBioinformatics...1626 days ago
1594 days ago
3D de novo assembly (3D DNA) pipeline
For a detailed description of the pipeline an...with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the origin...on see https://github.com/theaidenlab/AGWG-merge.1594 days ago
1589 days ago