PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome as...2182 days ago
gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2126 days ago
nQuire: a statistical framework for ploidy estimation using next generation sequencing
...ical studies of pathogens, artificial selection experiments, and for historical or ancient samples where intact nuclei are not preserved. It is implemented as a stand-alone Linux comman...2067 days ago
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Retrieving Taxonomic Information with R
...nomic information with myTAI. The taxonomy() function implemented in myTAI relies on...ormation retrieval. Specifically, the taxonomy() function implemented in myTAI can be use...1738 days ago
HaploTypo: a variant-calling pipeline for phased genomes
...the haplotype correspondence for each heterozygous variant called on a phased reference genome. Availability and Implementation HaploTypo is implemented in Python 2.7 and Python 3.5,...1626 days ago
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EFS: an ensemble feature selection tool implemented as R-package and web-application
The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance....1586 days ago