Results for "maps"
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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protoco...2366 days ago
- MashMap is a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s). It maps a query sequence against a reference region if and only if...
2359 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...put architecture, where the patterns are represented with several HSV values (only value varies). The following image, illustrating the information maps between human and chimpanzee...2351 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...matics/btu392) is easy to install/run/configure supports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio...2336 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHE...2207 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...ntageous in the scientific interpretations and research work. The package provide multiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hy...1874 days ago
pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM form...2197 days ago
CGView - Circular Genome Viewer
...a package for generating high quality, zoomable maps of circular genomes. Its prim...he program can generate a series of hyperlinked maps showing expanded views. The l...acilitating data sharing. The feature labels in maps can be hyperlinked to externa...2170 days ago
Heatmapper: web-enabled heat mapping for all
...tively visualize their data in the form of heat maps through an easy-to-use graphi...s users to easily create a wide variety of heat maps for many different data types...and visualize: 1) expression-based heat maps from transcriptomic, pro...2067 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and bla...1995 days ago
