Results for "CA"
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...iple genome alignments in the presence of large-scale evolutionary events such as...sources. It employs algorithmic techniques that scale well in the lengths of sequ...r example, a pair of Y. pestis genomes can be aligned in under a minute...2027 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...recognition tool (written in very vanilla C). It can analyze an entire microbial...is a highly accurate gene finder. It correctly locates the 3' end of every gene i...rate compares favorably with other gene identification programs, and usually fal...2740 days ago
- ...(hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignme...ctions IMPORTANT NOTE: Progressive Cactus does not presently suppor...spaces. Until this is resolved, you can use a softlink as a workarou...cture, first source progressiveCactus/environment to load...
2721 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...m rearrangement events. Computational tools that can visualize genome alignments...nto the underlying data. Such visualizations typically are either realized in a l...ogeneous, remains a challenge. More at https://academic.oup.com/bioinformatics/a...2720 days ago
- ...te as BWA-SW at finding the single best alignment per query and is dramatically faster and more sensitive...h to find the optimal set of alignments that cover a query using a biologically relevant breakpoint penalt...
2718 days ago
- ...trying to correct for errors and uncalled bases. The assembler read...with quality information. If amplification primers were used (e.g.,...zinc finger binding residues), they can be removed from the sequence...tch best above the threshold and discard the ends of the sequence, i...
2715 days ago
Many-Core Engine (MCE) for Perl example
...ere are 4 add-on modules for use with MCE. MCE::Candy Provides a collection of...unk_size and max_workers) are configured automatically as well as spawning and sh...and MCE::Queue. Like with MCE::Flow, MCE::Stream can run multiple code blocks in...2707 days ago
iTOL: interactive Tree Of Life
...rs, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees can be exported to several graphical formats, both bitmap and vec...2707 days ago
- ...st is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection,...
2707 days ago
- ...ing language is now published! Besides online browsing and searching, you can also view everything in one...the language. Documentation for the different but related Perl 5 language can be found on the Perl 5 docum...
2705 days ago
