Filtlong: quality filtering tool for long reads
...and read identity (higher is better) when choosing which reads pass the filter. Filtlong builds into a stand-alone executable: git clone https://github.com/rrwick/Filtlong.git cd F...1516 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/b...1511 days ago
gggenes: a ggplot2 extension for drawing gene arrow maps.
Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes1496 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering t...1215 days ago
Far Manager Commands and Links !
...d directories; editing, copying and renaming files; and many other actions. https://www.farmanager.com/ Basic instruction at https://conemu.github.io/en/FarManager.html Plugin...1475 days ago
truvari: Structural variant comparison tool for VCFs
Structural variant comparison tool for VCFs Given benchmark and comparsion sets of SVs, calculate the recall, precision, and f-measure. Spiral Genetics Motivation1467 days ago
ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
...kground to detect HGT events in prokaryotes. https://www.mdpi.com/2073-4425/11/7/756/htm https://shadowcaster.readthedocs.io/en/latest/ https://github.com/dani2s/ShadowCaster_testD...1454 days ago
1437 days ago
GROMACS: a versatile package to perform molecular dynamics
...ser friendly and efficient MD experience by performing many preparation and optimization steps automatically. GROMACS conda https://bioconda.github.io/recipes/gromacs/README.htm...1430 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
...ntifying differential promoter utilization. version 1.0.0 - updates several descriptions and tests. To achieve v0.9.4, one can visit https://github.com/zhyqin/SEASTAR-0.9.4 ...1424 days ago