HASLR: a hybrid assembler which uses both second and third generation sequencing reads
HASLR, a hybrid assembler which uses both second and third generation sequencing reads to efficiently generate accurat...1518 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genom...de break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants b...1505 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed...ural networks applied from a pileup of individual sequencing reads against a draft assembl...1504 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...ABySS ALLPATHS Celera SHARCGS Allpaths IDBA TAIPAN Edena SOAPdenovo Maq IDBA-UD No. of Reads p...ads Simulator HiTEC, FASTQC Minimum Description Length SOAPaligner Sequencing Read Archive Toolkit...1504 days ago
1494 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda&...1473 days ago
1472 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assemb...1458 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: single-end/pai...1452 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
PyParanoid is a pipeline for rapid identification of homologous gene families in a s...nbsp;resources to identify RBHs. This is problematic, as the modern deluge of sequencing data means that comparative g...1417 days ago