wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite...monly used KS and colinearity analysis workflows together with tools for modeling and visualizati...1439 days ago
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mixtureS: a novel tool for bacterial strain reconstruction from reads
...fied the strains, their numbers and their abundance. Compared with three tools, mixtureS showed better perf...ajority of experimental datasets. Availability The source code and tool mixtureS is available at ...1410 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt i...1409 days ago
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G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.1374 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
...r post-docking structural filtration, available as a web-server. The new tool is easy to use and configure...nd can be operated on-line using the built-in HTML5 interactive analysis tools, or can be downloaded for a...1314 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of T...1313 days ago
Liftoff: An accurate GFF3/GTF lift over pipeline
Liftoff is a tool that accurately maps annotations in GFF or GTF be...ated species. Unlike current coordinate lift-over tools which require a pre-generate...ain” file as input, Liftoff is a standalone tool that takes two genome assembl...1289 days ago