kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment fr...ng one. De novo estimates of genetic relatedness from next-gen sequencing data https://kwip.readthedocs.org2229 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosoma...uire prior sequencing of a reference genome: the same sequencing data can be used for the assembly...2228 days ago
2227 days ago
2222 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative C...be individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, or contigs that were output...2216 days ago
2216 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices...xplore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in the examples below is from...2216 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de....5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster tha...sp;FALCON and Canu(v1.3) in five real datasets. The quality of assembled...2247 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including source code,...2244 days ago
2243 days ago