SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosoma...uire prior sequencing of a reference genome: the same sequencing data can be used for the assembly...2225 days ago
2224 days ago
2219 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative C...be individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, or contigs that were output...2214 days ago
2214 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices...xplore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in the examples below is from...2213 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de....5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster tha...sp;FALCON and Canu(v1.3) in five real datasets. The quality of assembled...2245 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including source code,...2242 days ago
2240 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromo...e "chromosome heatmap" that, in addition to mapping elements, can visualize the data associated with chromosome el...1909 days ago