Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bi...1235 days ago
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FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Cal...and emits standard variant call format (VCF) files and will slot into existing sequencing pipelines. It allows users to...1220 days ago
AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More at https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bbab022/61467721205 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS pl...1101 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the...e package aims to cover the whole analysis workflow of typical high throughput sequencing experiments, starting from th...1053 days ago
A guide to machine learning for biologists
We aim to provide readers with a gentle introduction to a few key machine learning techniques, including the most recently developed and widely used techniques involving deep neura...1020 days ago
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UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted...which is an ultra-fast tool to identify and visualize microbial sequences from sequencing data. https://github.com/Ope...927 days ago