Results for "R"
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AccNET is a Perl application that presents a new way to study the accessory genome of a given set of orga...Using the proteomes of these organisms, AccNET create a bipar...hylogenetic and functional information in a network improving...w.youtube.com/watch?v=vdGuy1GAJrQ2819 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) express...ort-read deep sequencing data. In its present implementation MIRO is e...Solexa-reads, map them flexibly to several reference genomes using one...
2822 days ago
- BBMAP • a solution for everything That content has been reformatted and it is being expanded to include more information. There are common options for most...chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a length...
2816 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral...th a command subcommand syntax: virmet fetch --viral n, for examp...genomes wolfpack analyze a Miseq run covplot plot coverage...
2816 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thousands of speci...hylogenetic classification of raw sequence reads into groups...assify DNA sequences, can accurately classify reads as short...
2816 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publicati...variation, expression, etc.) from a UNIX terminal window. Fun...eries. Record retrieval and formatting normally complete the...commands and UNIX utilities or scripts to perform actions th...2807 days ago
- ...isualization has played an extremely important role in the current genomic revolution to inspect and under...ents is lost for structural variations in the one-dimensional...between these two genes. After SMRT sequencing, Ribbon shows...at https://github.com/MariaNattestad/ribbon...
2805 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production o...llenges in biology, both in terms of available computational...inyheatmap: an advanced user-friendly heatmap software suite...
2805 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from u...and help to choose parameters for downstream analysis. We demonstrate i...
2398 days ago
- Beagle is a software package that performs genotype calling, genoty..., imputation of ungenotyped markers, and identity-by-descent segment detection. Beagle version 4.1 has a more accurate g...ogram version and cite the appropriate article. The citation...
2799 days ago
