2227 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2225 days ago
2222 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo ge...e individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, or...2216 days ago
2216 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a loo...plore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in t...2216 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single...5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster tha...p;FALCON and Canu(v1.3) in five real datasets....2247 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including s...2244 days ago
2243 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of..."chromosome heatmap" that, in addition to mapping elements, can visualize the data asso...1911 days ago