vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking structural filtration, available as a we...ess large libraries of up to 150’000 docked ligand poses. The results are web-based and...1318 days ago
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GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constit...zip only connects sequences in the assembly graph that already had a potential link based on...1245 days ago
FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on...1224 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of ba...e is hosted on readthedocs. Run pip install luigi[toml] to install Luigi with TOML-based con...1107 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent...e recently, we've been enthused about using k-mer based similari...y measures and computing and searching k-mer-based ske...1044 days ago
RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold merging1028 days ago
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Fix rewritable error of ELGG !
The mod_rewrite module uses a rule-based rewriting engine, based on a PCRE regular-expression parser, to rewrite requ...unlimited number of attached rule conditions, to allow you to rewrite URL based on...963 days ago