SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...ith several HSV values (only value varies). The following image, illustrating the information maps between human and chimpanzee for the several chromosomes, depicts an example: &...2388 days ago
Foldit: Solve Puzzles for Science
...with the UW Department of Biochemistry. The objective of Foldit is to fold the structures of selected proteins as perfectly as possible https://fold.it/portal/...2388 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...sim;98% reduction of false variants when combined to conventional public pipelines and ∼48% to the in-house commercial solution, with a minimal loss of sensitivity The program...2387 days ago
Building Web UIs With Mojolicious Perl
Mojolicious is one of 3 leading web frameworks available in the perl ecosystem (along with Dancer and Cata...ancer2 Gantry - Web application framework for mod_perl, cgi, etc. Kossy - A Web framework with...2382 days ago
PASA: Gene Structure Annotation and Analysis
...alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimen...2382 days ago
2382 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...eveloped on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Geno...g and reducing an overlap graph (Ra layout, https://github.com/mariokostelac/ra).2381 days ago
xmatchview: smith-waterman alignment visualization
...quences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the align...and run on linux and windows. They serve as visual tools for analyzing cross_match alignments. Cross_matc...2381 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science,...ms, 2016), as well as additional dependencies noted below. Feel free to post your questions and comments...2381 days ago
JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2380 days ago