SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequ...20). The method has been approached with a tool (also called SMASH). For visualization, SMASH outputs a S...2386 days ago
Foldit: Solve Puzzles for Science
Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game...2386 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
...ntly search for regulatory relationships from over 20 million pubmed articles, we used sentence-based text mining approach. TRRUST database also provides information of mode of reg...2386 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...ion of false variants when combined to conventional public pipelines and ∼48% to the in-house commercial solution, with a minimal loss of sensitivity The program with a detaile...2385 days ago
Building Web UIs With Mojolicious Perl
...is one of 3 leading web frameworks available in the perl ecosystem (along with Dancer and Catalyst) and by far my favorite. Mojolicious aims to provide a complete web development...2381 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtaine...2380 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...ical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome I...eral separate components that used to be run individually.This project aims to ea...("graphmap -w owler", https://github.com/isovic/graphmap) and constructing a...2379 days ago
xmatchview: smith-waterman alignment visualization
xmatchview and xmatchview-conifer are imaging tools for comparing the syn...he alignment in a variety of image formats. xmatchview and xmatchview-conifer are...ython and run on linux and windows. They serve as visual tools for analyzing cross...2379 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...sive fashion allows to simultaneously work with scaffold assemblies obtained from any in silico and in vitro techniques, supporting multiple existing formats via built-in converters creates...2379 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the curre...2379 days ago