CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in the nu...pped mates of mapped short reads. Our results on bacterial, fungal and insect data sets show that CoLoRMap compa...2141 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for st...Mulan supports two-way communication with the GALA database; alignments of multiple s...ated and overlaid with extensive genome annotation data using GALA.2138 days ago
2125 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisa...d analysis of mapped sequence data. It was written for use with...pped next generation sequence data but can in theory be used for...ures are: Import of mapped data from mapped data (BAM/SAM/bow...sets Statistical analysis of data to find regions of interest...2120 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides bo...mand-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feat...2120 days ago
2114 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web server that all...sers to interactively visualize their data in the form of heat maps thro...riety of heat maps for many different data types and applications. Heatm...o interactively explore their numeric data values by hovering their curs...2100 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in Evidential...ow the only way to get it is to produce way too many assemblies on a good RNA data set, with several methods and...2099 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-generation...ternatively, if your scientific question is focused on only one aspect of the data (e.g. breakpoints), many read...2096 days ago
2096 days ago