EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in E...now the only way to get it is to produce way too many assemblies on a good RNA data set, with several methods and...2103 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-g...Alternatively, if your scientific question is focused on only one aspect of the data (e.g. breakpoints), many read...2100 days ago
2100 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory...esults. Based on simulation and a real guppy RAD-seq data, we show that Rainbow is more...mpetent than the other tools in dealing with RAD-seq data2086 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional an...enerates annotations for each gene based on multiple databases about pathways, diseases...e, it can accept either gene list or gene expression data as input, and generates enric...2086 days ago
2080 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment o...e, exon-capture, and targeted capture data, it has been run on very larg...2080 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow eas...alization of variant call format (VCF) data. Functions are provided to ra...from and write to VCF files. Once VCF data is read into R a parser funct...tions provide visualization of genomic data. Once processing is complete...2080 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2080 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX: java -mx512m -jar BamView.jar and extra command line options are given when '-h' is used:...2064 days ago