CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs in...1474 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors. When the query file format is fasta, you can spec...1379 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary...1297 days ago
Kmer: a suite of tools for DNA sequence analysis
...h multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions. Meryl: An out-of-core k-mer counter. The amount of...1018 days ago
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odgi: optimized dynamic genome/graph implementation
...iciently compute and transform pangenomes with minimal overheads. odgi implements a dynamic data structure that leveraged multi-core CPUs and can be updated on th...850 days ago
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