MetaSim A Sequencing Simulator for Genomics and Metagenomics.
...given genomes, the program allows the user to design a metagenome by specifying the number of genomes present at different levels of the NCBI taxonomy, and then to collect...2373 days ago
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HTTDB - Horizontally transferred transposable elements database
...er also known as endogenization events which is characterized by the stable integration a viral genomic fragment into the host genome. https://www.ncbi.nlm.nih.gov/pubmed/293153582323 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...models, (iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is f...2296 days ago
Carefully opt for human reference genome
...wing compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the following: ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/0...1567 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This is...2193 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHE...2212 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which conta...2212 days ago