CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...ing of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run...1476 days ago
medaka: Sequence correction provided by ONT Research
...sp;is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a dr...1476 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently eva...1430 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedure...tagenome Co-assembly of a large number of metagenomes via merging of individual metagenomes Includes binning...1386 days ago
CoverM: Read coverage calculator for metagenomics
...elative abundance calculator focused on metagenomics applications. CoverM calculates coverage of genomes/MAGs coverm genome (help) or individual contigs coverm contig&nb...1130 days ago
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