Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User I...mmand-line interface to facilitate the quality control of alignment sequencing data and...2127 days ago
2121 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps thro...riety of heat maps for many different data types and applications. Heatm...o interactively explore their numeric data valu...2107 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too ma...now the only way to get it is to produce way too many assemblies on a good RNA data set,...2106 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based app...A/EST and/or protein sequences are used to predict gene structures via spliced alignments. ...2104 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files....lternatively, if your scientific question is focused on only one aspect of the data (e.g...2103 days ago
2103 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory-efficient solution to cluster...sults. Based on simulation and a real guppy RAD-seq data, we show that Rainbow is more...petent than the other tools in dealing with RAD-seq data2089 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module...nerates annotations for each gene based on multiple databases about pathways, diseases..., it can accept either gene list or gene expression data as i...2089 days ago
2083 days ago