2219 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo ge...e individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, or...2213 days ago
BEAP: Blast Extension and Assembly Program
...as "primer", to recursively blast nucleotide databases in an attempt to obtain...cting a "full length" sequence for functional analysis, or at least to obtain neighb...for SNP discovery and linkage disequilibrium analysis. The confidence of assembling...2213 days ago
2213 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a loo...plore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in...2213 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single...5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster tha...p;FALCON and Canu(v1.3) in five real datasets...2244 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including...2241 days ago
2240 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of..."chromosome heatmap" that, in addition to mapping elements, can visualize the data ass...1908 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex...ten in perl and requires the Graph perl module. Several additional scripts for analysis are included. The source code...2232 days ago