Biotite: A general framework for computational biology
The package is open source and freely avai...our sub packages: sequence, structure, databases, and application. The&nb...he analysis of sequence and structural data analysis respectively, d...on working with sequence and structure data and supports various file for...2029 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding...2027 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together wi...2021 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error co...each iteration by incorporating knowledge gathered from previous iterations via data-driven confidence metrics ass...2015 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship pr...2014 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequen..., annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local...2014 days ago
2014 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy numbe...nts (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-s...states. We validate EXCAVATOR on three datasets and compare the results w...nts (CNVs) from whole-exome sequencing data.EXCAVATOR has been published...2012 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced fo...es of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive li...2012 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target...d for alignment. On benchmarks with standard RNA-Seq data, kallisto can quant...2009 days ago