Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for th...haplotypes by gold standard (long) reads ranbow phylo: for the phylogenetic analysis...2224 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the m...2223 days ago
EAGLER: a scaffolding tool for long reads.
EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS...long reads are used to extend the contigs present in the NGS draf...2221 days ago
2220 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo ge...e individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, or...2214 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program...mer", to recursively blast nucleotide databases in an attempt to obtain..."full length" sequence for functional analysis, or at least to obtain neighb...discovery and linkage disequilibrium analysis. The confidence of assembling...2214 days ago
2214 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a loo...plore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in...2214 days ago
2213 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single...5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster tha...p;FALCON and Canu(v1.3) in five real datasets...2245 days ago