EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normaliz...er states. We validate EXCAVATOR on three datasets and compare the results w...riants (CNVs) from whole-exome sequencing data.EXCA...2012 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RN...types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data proc...2011 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target...for alignment. On benchmarks with standard RNA-Seq data,&nbs...2008 days ago
2008 days ago
EyeChrom: Visualizing Chromosome Count Data From Plants
It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database....2008 days ago
2005 days ago
2005 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section2003 days ago
2001 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to b...How to perform basic quality checks on the input data How...1996 days ago