MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment al...sing MPI to overcome high memory overhead barrier and achieve good parallel and data-size scalability.1825 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bit...ng chromosome-conformation capture sequencing (Hi-C) data suitable for use with the pip...tes of 10X Genomics on how to generate Chromium data....1784 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model o...1777 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating geno...erts to refine these approximations by viewing and independently evaluating the data supporting each annotation. A...1777 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Scha...the following features: Good performance. On a MacBook Pro using Arabidopsis data, pseudochromosome constructio...1716 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of...1708 days ago
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BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized,...active report from your own raw or processed RNA-seq data through a simple user interfa...e for access to unlimited private notebooks, RNA-seq datasets and alignment jobs.1296 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and ve...to clean up assembly errors. It's also very fast and well suited for long-read data. However, it operates on FAST...1679 days ago