HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs...g read region can be aligned to at least one contig region, including its true genome r...2221 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome a...2218 days ago
BEAP: Blast Extension and Assembly Program
...tide databases in an attempt to obtain all sequences that overlaps, directly or...elp to "extend" the length of the original sequence for constructing a "full le...ing sequences is achieved by using a known genome, such as human genome, as a reference. https://ww...2218 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome an...tion. We use minimap version 2 to align the two genomes....2218 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-c...ost completely recovered and equivalent to those in a complete genome,...2217 days ago
2217 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information...selection process. It can also analyze multiple genomes at one run and generates con...e comparison of enzyme(s) performance across the genomes....2217 days ago
2215 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequen...mum alignment (including gaps) of two sequences along their entire length. T...ing and extending gaps in the aligned sequences. The substitution matrix and...2210 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single...be used for effectively de novo assemblying large genomes. For example, on a 32-thread...GHz CPU , MECAT takes 9.5 days to assemble a human genome b...2249 days ago