2016 days ago
Hawkeye: an interactive visual analytics tool for genome assemblies
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if th.... Hawkeye is our new visual analytics tool for genome assemblies, designed to aid i...;http://amos.sourceforge.net/hawkeye. https://genomebiology....2014 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization...g in genomics. Our flagship product is Integrated Genome Browser (IGB).For more inform...sp;http://www.bitbucket.org/lorainelab/integrated-genome-browser...2014 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple align...iles can be loaded.This project has moved to GitHub: https://github.com/GenomeView/gen...2014 days ago
2014 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR com...CNVs) from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology....2011 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section2003 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorithm and extends...2003 days ago
2003 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building contigs and...1996 days ago