2000 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...will be guided through the genome assembly starting with data quality control, through to building contigs and analysis of the results. At the en...know: How to perform basic quality checks on the input data How to run a short read assemble...1996 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporti...design, high quality molecule depiction, molecular database tools supporting substruc...based virtual screening, bioactivity prediction and data vis...1995 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representation... Gene Ontology (GO) annotated interaction data mai...1995 days ago
1995 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph...1994 days ago
Roary: the Pan Genome Pipeline
...calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples...under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would...1993 days ago
1993 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layou...queries. The matrix layout enables the effective representation of associated data, su...1987 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidi...dy variation is observed. Specifically, nQuire uses next-generation sequencing data to...1984 days ago