Tadpole: an assembler, error-corrector, and read-extender
...;Tadpole is very conservative and optimized for correctness rather than length; which is to say, it stops at...d el=50 er=50To error-correct and extend at the same time, using a kmer length of 62:tadpole.sh in=reads.fq...1599 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...reported (Locus, number, Start and End position in the entry, sequence, length, G+C content, presence of not...T starting / AG ending introns, minimum / maximum / average length, length standard deviation) ....1471 days ago
Filtlong: quality filtering tool for long reads
Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read iden...1501 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...IDBA TAIPAN Edena SOAPdenovo Maq IDBA-UD No. of Reads present in the Ref. Seq. ART NGS Reads Simulator HiTEC, FASTQC Minimum Description Length SOAPaligner Sequencing Read...1496 days ago
The wavefront alignment (WFA) algorithm
...process. As opposed to traditional dynamic programming algorithms that run in quadratic time, the WFA runs in time O(ns), proportional to the read length n and the alignment score s,...1455 days ago
DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
...pecific version of the DADA2 workflow identifies and verifiably removes primers on both ends of each ITS read, a key step due to the variable length of the ITS region. Short dem...1319 days ago
Peregrine & SHIMMER Genome Assembly Toolkit
Peregrine is a fast genome assembler for accurate long reads (length > 10kb, accuracy > 99%). It can assemble a human genome from 30x reads within 20 cpu hours from reads to pol...919 days ago
odgi: optimized dynamic genome/graph implementation
...rom biological data sets tend to have local partial order and, when sorted, the deltas be small. This allows them to be compressed with a variable length integer representation, resul...871 days ago
850 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
...t for your study depends on your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment....738 days ago