Results for "and ChIP-seq and RNA-seq analysis"
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AccNET is a Perl application that presents a new way to study the ac...ork compatible with common network analysis...orms. AccNET collects phylogenetic and functional information in a network improving the analysi...uired by horizontal gene transfers and not constricted by hierarchical st...2796 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA)...YASS uses seeds to detect potential similarity regions, and then tries to extend them to...es of YASS are: multiple, possibly overlapping seeds and a ne...2954 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted seque...an error-tolerant way. It can also modify and filter reads in various ways....ldcard characters. Also, paired-end reads and even...
2943 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation...Hagfish builds on the concept of coverage plots and aims to assist (amongst other...periment. Hagfish requires a reference sequence and a paired end re-sequenci...2935 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2935 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference ge...s recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq...
2935 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2933 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite...ned to deal with sequencing data from RRBS and its variants, but also target...ned from Tab-seq or oxBS-seq. It can also handle whole-genome bisulfite sequencin...
2922 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC p...nome data for contaminants, symbionts and parasites using taxon-annotat...1 to Frontiers in Bioinformatics and Com...s bash/perl/R scripts for running the analysis presented in the paper to cre...
2912 days ago
- The Genome Assembly Evaluation Metrics and ...rogram to generate a complete analysis report, or executed indi...y to generate specific charts and tab...be entered into GAEMR’s analysis pipeline, hence enabling the generation of standard reports. GAEMR’s analysi...
2911 days ago
