Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fundamental concepts and expe...nalysis and interpretation of experimental genomics data. It will be structured as a s...ysis. Students will learn and apply the fundamental data f...1292 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being...of each cancer type being over 200. Resulting data consisting of somatic va...TCGA sources or any in-house studies as long as the data i...1292 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in se...binning algorithm and achieves the best haplotype-resolved assembly given trio data....1291 days ago
Genomic Open-source Breeding informatics initiative
To build open-source genomic data management and analysis tools to enable breeders to implement genomic and marker...f their routine breeding programs. To transform breeding by connecting diverse data w...1277 days ago
The Breeding API (BrAPI) project
The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized...API specification for communicating plant breeding data....1277 days ago
AutoGluon: AutoML for Text, Image, and Tabular Data
AutoGluon automates machine learning tasks enabling you to easily achieve strong predictive performance in your applications. With just a few lines of code, you can train and deploy high-accuracy machine learning and deep learning models on text, image, and tabular data.1277 days ago
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GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into t...constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects...ed diploid Escherichia coli genome, and on two real datase...1247 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under ...1241 days ago