Hawkeye: an interactive visual analytics tool for genome assemblies
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they...keye is our new visual analytics tool for genome assemblies, designed to aid i...://amos.sourceforge.net/hawkeye. https://genomebiology.biomedcentral.com/articl...2062 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization...ng in genomics. Our flagship product is Integrated Genome Browser (IGB).For more inform...bsp;http://www.bitbucket.org/lorainelab/integrated-genome-b...2061 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments....This project has moved to GitHub: https://github.com/GenomeView/genomeview2061 days ago
2061 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combi...(CNVs) from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebi...2059 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visu..., ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU a...d is able to make many-views from the same primary sequence alignment data which users ca...2059 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section2050 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorithm a...2050 days ago
2050 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer...n which the leaves are named with a species idenfifier, a field separator, and sequence identifier. By default, the f...2049 days ago