1492 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...ynteny and collinearity detection toolkit and generate publication ready images. Sy...ScanX query. The collinearity file generated as an output by McScanX for...apped. Users also have option to download the generated visualizations in publicatio...1490 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together...941 days ago
931 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not pr...925 days ago
AGORA: Algorithm for Gene Order Reconstruction in Ancestors
.../ ___ ( / ___ | // | | // / / // / / // | | // | | // | | ((____/ / ((___/ / // | | // | | AGORA is used to generate ancestral genomes for the&nbs...851 days ago
Creating Genetic Maps from GBS data
Genetic map, as the name suggest is simply knowing the relative positions of specific sequences across the genome. There are various methods to generate them, but most popular method i...295 days ago
CGView.js is a Circular Genome Viewing tool
...Capable of drawing genomes up to 10 Mbp with 1000's of features and 100's contigs Smooth zooming down to the sequence level Easily generate features and plots directly f...94 days ago
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
Alvis, a simple command line tool that can generate visualisations for a number of common alignment analysis tasks. Alvis is a fast and portable tool that accepts input in a variety of...52 days ago