Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficie...This saves researchers from tedious manual annotation of these sequences. The program utilizes tBLASTn and BLASTn a...2561 days ago
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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports ge...notation engine for DFAST, which is also available as a standalone command-line program. The new engine can annotate...2392 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assem...2379 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, p...procedure of chromosome analysis," explain the scientists. "The output of the program is Microsoft XL table and pub...2379 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that...tion of typical metagenome data sets. Based on a database of given genomes, the program allows the user to desig...2372 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce ar...8% to the in-house commercial solution, with a minimal loss of sensitivity The program with a detailed manual is ava...2354 days ago
PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatica...2349 days ago