Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By...t of the Thousand Genomes and WGS500 projects, and is being used in clinical...2047 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2047 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
Given the potential relevance of efficient haplotyping in several analysis pipelines...nbsp;pWhatsHap is embedded in a toolkit developed in Python and supports genomics datasets in standard file for...2027 days ago
1980 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Inte...1978 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a t...able tool for the investigation of CNVs in largescale projects, as well as in clinical...1975 days ago
1959 days ago
Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblie...ds would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely di...1958 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. T...in Himmelbach et al. 2018. Refer to the technical notes of 10X Genomics on how to generate Chromium d...1748 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host...features and optimizations, Seq makes writing high-performance genomics software as easy as writing P...1653 days ago