phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly...1637 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because o...v models, and Bayesian networks) for biological sequence analysis and systems biology. Other machine learning techn...1614 days ago
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GROMACS: a versatile package to perform molecular dynamics
GROMACS is a versatile package to perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with...cleic acids. The WeNMR GROMACS web portal combines the versatility of this molecul...1395 days ago
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vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking structural filtration, available as a web-server. The new t...to detect a wide range of interaction types that are known to be involved in molecul...1285 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. Fo...1253 days ago
Introduction to Bioinformatics and Computational Biology
This is the course material for STAT115/215 BIO/BST282 at Harvard University. Xiaole Shirley Liu (lead instructor)Joshua StarmerMartin HembergTing WangFeng Yue Ming T...1224 days ago