mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the disc...2988 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly...ming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). More at https://gatb.inri...2985 days ago
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps on...The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days...alma, F., & Lindblad-Toh, K. (2010). Genome-wide synteny through highly s...2971 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generat...assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome re-sequencing experiment. Ha...2963 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for...nd third-generation sequencing reads to a reference genome. Uniquely among current mappi...g technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly a...2963 days ago
2963 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specific...achine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigW...2962 days ago