Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
...t databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA + CovB)). Such...852 days ago
721 days ago
PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
...put program dealing with lower quality data. Examples include low-coverage (5x cpDNA) plastome phylogeny...target enrichment data, retrieving low-copy nuclear genes from medium coverage (5x nucDNA) genome skimming....295 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
...put program dealing with lower quality data. Examples include low-coverage (5x cpDNA) plastome phylogeny...target enrichment data, retrieving low-copy nuclear genes from medium coverage (5x nucDNA) genome skimming....126 days ago
Panacus : A Counting Tool for Pangenome Graphs
...tart of another. panacus supports the following calculations: coverage histogram pangenome growth statistics path-/group-resolved coverage table...12 days ago