2182 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding...2181 days ago
2181 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human referenc...ad length. SOAPaligner benefitted in time and space efficiency by a revolution in the basic data structures...2201 days ago
2196 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference gen...imap2 -ax sr ref.fa read1.fa read2.fa > aln.sam # short genomic paired-end reads...2173 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once...tracks. Very light server resource requirements. In fact, JBrowse has no back-end serve...2164 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in...cing technology, using high-quality Illumina paired-end reads mapped onto the long re...that minimizes the edit score to a long read and extending co...2112 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment...ualization for studying function and evolution Mulan (http://mulan.dcode.or...y functional elements conserved over evolutionary time. Mulan brings togethe...nd the multiTF program for detecting evolutionarily conserved transcription...2108 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-s...2094 days ago