Caretta – A multiple protein structure alignment and feature extraction suite
Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple...ucture alignment suite meant for homologous but sequentially divergent protein families which consistently r...1253 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets....1221 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets....960 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of...The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (bas...878 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites...the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq da...876 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample c...presentation. Here we present a method to consider protein dynamics in the presence of &...d in structures solved by x-ray crystallography, a protein in homo-/hetero-dimers, a par...858 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note tha...729 days ago
369 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to...92 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
OMArk is a software for proteome (protein-coding gene repertoire) quality assessment....teness, characterizes the consistency of all protein coding genes with regard to t...he OMAmer software for fast placement of all proteins into gene families.92 days ago