Results for "NGS Data Analysis"
Bookmarks
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly importan...pot outliers is necessary in such large and complex data set...2983 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core de...2981 days ago
- AccNET is a Perl application that presents a new way to...a bipartite network compatible with common network analysis platforms. AccNET collects ph...functional information in a network improving the analysis capability. Networks offer a...
2819 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes...rom hundreds of species, to gauge completeness of rapidly accumulating genomic data and...
2969 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of...ur high-throughput sequencing reads. Cleaning your data in this way is often required...racters. Also, paired-end reads and even colorspace data is...
2966 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. T...
2966 days ago
Hagfish - assess an assembly through creative use of coverage plots
...agfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds o...coverage plots and aims to assist (amongst others) in quality control of...d a paired end re-sequencing data set. Hagfish has more power the l...2958 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipu...resenting large-scale multi-sample genomic research data. It...2959 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing r...ces SMRT. Indeed, MOSAIK was the only aligner to provide consistent mappings for all the generated data (se...2958 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2958 days ago
