1472 days ago
GROMACS: a versatile package to perform molecular dynamics
GROMACS is a versatile package to perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is able to work wi...1422 days ago
COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL
The COVID Moonshot is an ambitious crowdsourced initiative to accelerate the development of a COVID antiviral. We work in...1287 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the se...plished on human mitochondrial DNA although the same approaches will work eq...1098 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1040 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lo...view and waxing enthusiastic about other people's work. Then in a future blog post I'll talk about how we're building off of this work in...1037 days ago
Understanding pango networks !
In the vast majority of instances it is expected that Pango lineage names and designat...ineage Designation Committee. https://www.pango.network/the-pango-nomenclature-system...tement-of-nomenclature-rules/ https://www.pango.network/ho...986 days ago
Fix rewritable error of ELGG !
The mod_rewrite module uses a rule-based rewriting engine, based on a PCR...nf <VirtualHost *:80> <Directory /var/www/html> Options Indexes FollowSymLinks MultiV...957 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a...s published (1) and reviewed (2); its GNM counterpart is first derived in this work an...894 days ago
857 days ago