NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...ely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly...1501 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...s room setting.Therefore, Genobuntu offers a well-tailored environment for both novices and experts working in the field of genome assembly. Features Velvet MiB SSAKE EULER...1488 days ago
The wavefront alignment (WFA) algorithm
...alignment score s, using O(s^2) memory. Moreover, the WFA exhibits simple data dependencies that can be easily vectorized, even by the automatic features of modern compilers, for diff...1447 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...[Wescott 2015].The statistical analysis is based on DESeq2 R package [Anders and Huber 2010] which robustly identifies the differential abundant features as suggested in [McMurdie and...1397 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...agenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta features several unique characteristic...1397 days ago
1391 days ago
FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools...1204 days ago
1002 days ago
CGView.js is a Circular Genome Viewing tool
...an expert system for genome assembly, annotation and visualization. Features Circular and linear view...of genomes Capable of drawing genomes up to 10 Mbp with 1000's of features and 100's contigs Smooth...79 days ago
30 days ago