1585 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1552 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides...d analyses, Phytozome facilitates accurate and insightful comparative genomics studies.1552 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...e information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-1...-end Desktop computers (Intel i7, 12 CPU threads, 128 GB RAM). Larger mammalian genomes (~3Gbp) can be proce...1194 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named...tools for modeling and visualization, rendering these analyses accessible to genomics researchers in a convenient m...1424 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
PyParanoid is a pipeline for rapid identification of homolo...et of genomes - a central task of any comparative genomics analysis. The "gold standard"...deluge of sequencing data means that comparative genomics analyses could be performed o...1403 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt...1394 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimp...y, population and evolutionary biologists working in the field of comparative genomics.1312 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fu...n the analysis and interpretation of experimental genomics data. It will be structured a...d analysis strategies that underlie computational genomics research. The primary go...1271 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas ...1271 days ago