HS3D: Homo Sapiens Splice Sites Dataset
...presence of not AGCT data (nucleotide scan check)). Statistics are also reported (overall nucleotides, average G+C content, nucleotide scan check results, number of not GT starting /...1459 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
SynVisio lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to...1471 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This typically results in improved contig N50 when c...1188 days ago
1452 days ago
1418 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...enomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large va...1393 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...of a large number of metagenomes via merging of individual metagenomes Includes binning and bin checking, for retrieving individual genomes The results are stored in a database, whe...1393 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
...contacts, π-stacking, and cation-π interactions. The web-server can process large libraries of up to 150’000 docked ligand poses. The results are web-based and can be oper...1293 days ago
QuasiModo - Quasispecies Metric Determination on Omics
This repository contains the scripts and pipeline that reproduces the results of the HCMV benchmarking study...This tool can also be used to evaluate assemblies and variant calling results on other similar datasets. h...1080 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
...) for quality assessment and to explore the relationship between samples, perform differential gene expression analysis, and visually explore the results.975 days ago