SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1565 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron a...and introns are reported (Locus, number, Start and End position in the entry, sequen...scan check results, number of not GT starting / AG ending in...1450 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomi...rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a struc...guided positional de Bruijn graph genome-wide break-end assem...1476 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from...enomes (~1 Gbp) chromosome scale assemblies can be achieved within 12h on high-end Deskt...1179 days ago
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RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: single-end/paired-end bulk...1423 days ago
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DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
The DADA2 tutorial goes through a typical workflow for paired end Illumina Miseq data: raw amplicon sequencing data is processed into...ADA2 workflow identifies and verifiably removes primers on both ends of e...1299 days ago
Updated science-wide author databases of standardized citation indicators
There was great interest in the databases of standardized citation metrics across all...ntists for career-long citation impact up until the end of 2019 (Table-S6-career-2019) and for citation impact during the single calendar yea...1293 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriopha...1252 days ago